* add task to write relatedness check to tsv

* fix requirements

* relatedness_check_table_path

* use run metadata as source of family table load

* ruff

add relatedness check file path to metadata.json

* Support gcs dirs in rsync

* ws

* Gencode refactor to remove gcs

* Fix

* metadata parameters refactor

* fix missing param

* tweak

* missed one

* last one

* fix test

* last few bugfixes

* fix

* bump

* missed one

* change parameter type due to confusing bug

* push

* enum

* Parse clinvar version from header

* responses activate

* fix test

…ing the reference data. (#950)

* Parse clinvar version from header

* Dependency reordering for reference data updates and validation

* ruff

* missed one

* Revert relatedness changes

* push

* Fix import issue

* Fix sample type

* ruff

* Fix import mocking

* imports

* responses activate

* fix test

* Tweaks

* comment

* Parse clinvar version from header

* First pass

* Bump hail tables to https

* correct dataset/dataset types

* Fix clinvar mito

* Fix combined

* Dependency reordering for reference data updates and validation

* ruff

* missed one

* Revert relatedness changes

* push

* Fix import issue

* Fix sample type

* ruff

* Fix import mocking

* imports

* Missed one

* First mocking pass

* Finish mocks in reference data

* responses activate

* ruff

* commas

* fix test

* Update compare_globals.py

* import

handle sex aneuploidy in pipeline